Installation

pip install insilico-cancer-center

Graph drawing uses pygraphviz, which needs the system Graphviz library installed first (e.g. brew install graphviz, apt-get install graphviz graphviz-dev, or conda install -c conda-forge graphviz).

From source

git clone https://github.com/pedrofale/iscc
cd iscc
poetry install

Command-line tools

Installing the package provides the pipeline entry points:

Tool	Stage
isccsim	grow a tumor
isccsample	biopsy / dissociate into a sample
isccdata	generate DNA/RNA/spatial assay data
isccfig, isccgif	figures and animations

Once installed, see the Overview for the pipeline and a quickstart.